Publications
Check back regularly for publications relating to the work of BIOcean5D.
2026
Integrating eDNA and acoustic-trawl data to provide small pelagic biomass estimates for fish stock assessment
Cristina Claver, et al., 2026. Integrating eDNA and acoustic-trawl data to provide small pelagic biomass estimates for fish stock assessment. ICES Journal of Marine Science, Vol. 83, Issue 2. doi: 10.1093/icesjms/fsag005
2025
The European Nucleotide Archive in 2024
Colman O’Cathail, et al., 2025. The European Nucleotide Archive in 2024. Nucleic Acids Research, Volume 53, Issue D1. doi: 10.1093/nar/gkae975
Interactive effects of multiple stressors in coastal ecosystems
Shubham Krishna, et al., 2025. Interactive effects of multiple stressors in coastal ecosystems. Frontiers in Marine Science, 11, 1481734. doi: 10.3389/fmars.2024.1481734
The Spatiotemporal Variability of Marine Plankton Ecosystem Services at the Regional Scale: A Combined Approach Using a Systematic Review and Network Analysis
Emergent Relationships Between the Functional Diversity of Marine Planktonic Copepods and Ecosystem Functioning in the Global Ocean
Fabio Benedetti, et al., 2025. Emergent Relationships Between the Functional Diversity of Marine Planktonic Copepods and Ecosystem Functioning in the Global Ocean. Global Change Biology, 31, no. 3. doi: 10.1111/gcb.70094
A Machine Learning-Based Dissolved Organic Carbon Climatology
Thelma Panaïotis, et al., 2025. A Machine Learning-Based Dissolved Organic Carbon Climatology. Geophysical Research Letters, 52, e2024GL112792. doi: 10.1029/2024GL112792
CEPHALOPOD, a package to standardize marine habitat-modelling practices and enhance inter-comparability across biological observations
Alexandre Schickele, et al., 2025. CEPHALOPOD, a package to standardize marine habitat-modelling practices and enhance inter-comparability across biological observations. Methods in Ecology and Evolution, 16, 1126–1135. doi: 10.1111/2041-210X.70040
Physiology and metabolism of eukaryotic microalgae involved in aquatic photosymbioses
Daniel P. Yee, et al., 2025. Physiology and metabolism of eukaryotic microalgae involved in aquatic photosymbioses. New Phytologist. doi: 10.1111/nph.70190
Unveiling the link between phytoplankton molecular physiology and biogeochemical cycling via genome-scale modeling
Antoine Régimbeau, et al., 2025. Unveiling the link between phytoplankton molecular physiology and biogeochemical cycling via genome-scale modeling. Science Advances, Vol 11, Issue 23. doi: 10.1126/sciadv.adq3593
Phytoplankton Dynamics in Subtropical Gyres: New Insights Into Biomass and Physiology From 25 Years of Satellite Observations
Chiara Volta, et al., 2025. Phytoplankton Dynamics in Subtropical Gyres: New Insights Into Biomass and Physiology From 25 Years of Satellite Observations. Geophysical Research Letters, 52, e2024GL111817. doi: 10.1029/2024GL111817
Evolution and stability of social learning in animal migration
Thøger Engelund Knudsen, et al., 2025. Evolution and stability of social learning in animal migration. Movement Ecology, 13, 43. doi: 10.1186/s40462-025-00564-3
Quantitative imaging datasets of surface micro- to mesoplankton communities and microplastic across the Pacific and North Atlantic oceans from the Tara Pacific expedition
Zoé Mériguet, et al., 2025. Quantitative imaging datasets of surface micro- to mesoplankton communities and microplastic across the Pacific and North Atlantic oceans from the Tara Pacific expedition. Earth System Science Data , Vol. 17, Issue 6. doi: 10.5194/essd-17-2761-2025
Data on Europe-wide public preferences for plankton-based ecosystem services and marine biodiversity from a series of deliberative monetary valuation workshops
Gilles Jean-Louis, et al., 2025. Data on Europe-wide public preferences for plankton-based ecosystem services and marine biodiversity from a series of deliberative monetary valuation workshops. Data in Brief, Volume 60, 111488. doi: 10.1016/j.dib.2025.111488
Overcoming the disconnect between species interaction networks and biodiversity conservation
Gabriel Dansereau, et al., 2025. Overcoming the disconnect between species interaction networks and biodiversity conservation. Trends in Ecology & Evolution, 40, 840-851. doi: 10.1016/j.tree.2025.05.010
Identifying Bottlenecks to Energy Circulation in the Bay of Biscay Pelagic Food Web: Key Species Under the Spotlight
Beñat Iglesias, et al., 2025. Identifying Bottlenecks to Energy Circulation in the Bay of Biscay Pelagic Food Web: Key Species Under the Spotlight. Ecosystems, 28, 43. doi: 10.1007/s10021-025-00990-9
Valuing marine plankton: a review of ecosystem services and disservices and an expert assessment of the potential of area-based protection
Eva Wanek, et al., 2025. Valuing marine plankton: a review of ecosystem services and disservices and an expert assessment of the potential of area-based protection. Frontiers in Marine Science, Vol 12. doi: 10.3389/fmars.2025.1607996
Biomass-to-volume ratio as a central continuous functional trait for marine zooplankton
Julie Lemoine, et al., 2025. Biomass-to-volume ratio as a central continuous functional trait for marine zooplankton. Limnology and Oceanography. doi: 10.1002/lno.70171
Indirect Effects of Temperature Drive Gradients in Fish Food Web Properties
Azenor Bideault, et al., 2025. Indirect Effects of Temperature Drive Gradients in Fish Food Web Properties. Global Ecology and Biogeography, 34, no. 9: e70110. doi: 10.1111/geb.70110
Stabilization of macroscopic dynamics by fine-grained disorder in many-species ecosystems
Juan Giral Martínez, et al., 2025. Stabilization of macroscopic dynamics by fine-grained disorder in many-species ecosystems. Physical Review E, Vol. 112, Issue 3. doi: 10.1103/5w5x-b1c2
Why do oceans shelter fewer species than land? A review on the role of sinking, dispersal and body size
Guillem Chust, et al., 2025. Why do oceans shelter fewer species than land? A review on the role of sinking, dispersal and body size. Oikos, e11542. doi: 10.1002/oik.11542. Preprint available here.
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae
Zoltán Füssy, et al., 2025. Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae. Nature Communications, 16, 8559. doi: 10.1038/s41467-025-63565-1
Six key policy recommendations to advocate for marine conservation that matches the ocean’s dynamism
Oscar Julian Esteban-Cantillo, et al., 2025. Six key policy recommendations to advocate for marine conservation that matches the ocean’s dynamism. npj Ocean Sustainability, 4, 50. doi: 10.1038/s44183-025-00151-4
Bridging the gap between marine science and policy: communicating for an informed society and decision-making
Angel Borja, et al., 2025. Bridging the gap between marine science and policy: communicating for an informed society and decision-making. Frontiers in Communication, 10: 1641970. doi: 10.3389/fcomm.2025.1641970
Topics and trends in marine ecosystem services research over the long term
Luca Russo, et al., 2025. Topics and trends in marine ecosystem services research over the long term. Environmental and Sustainability Indicators, Vol. 28, 100885. doi: 10.1016/j.indic.2025.100885
Marine Biodiversity in a Coastal Periphery Revealed by a Community-Based Monitoring Approach Integrating Citizen Science and Environmental DNA Metabarcoding
Daniele Bellardini, et al., 2025. Marine Biodiversity in a Coastal Periphery Revealed by a Community-Based Monitoring Approach Integrating Citizen Science and Environmental DNA Metabarcoding. Environments, 12(12), 474. doi: 10.3390/environments12120474
Viruses in multi-scale ocean models: challenges and opportunities
David Talmy, et al., 2025. Viruses in multi-scale ocean models: challenges and opportunities. Frontiers in Marine Science, 12:1717845. doi: 10.3389/fmars.2025.1717845
Developing and testing a new Ecological Quality Status index based on marine nematode metabarcoding: A proof of concept
Fabrizio Frontalini, et al., 2025. Developing and testing a new Ecological Quality Status index based on marine nematode metabarcoding: A proof of concept. Chemosphere, Volume 370, 143992. doi: 10.1016/j.chemosphere.2024.143992
Interplay of structured and random interactions in complex ecosystems dynamics
Juan Giral Martínez, et al., 2025. Interplay of structured and random interactions in complex ecosystems dynamics. PLOS Computational Biology, 21(12): e1013786. doi: 10.1371/journal.pcbi.1013786
2024
The European Nucleotide Archive in 2023
David Yuan, et al., 2024. The European Nucleotide Archive in 2023. Nucleic Acids Research, Volume 52, Issue D1, Pages D92–D97. doi: 10.1093/nar/gkad1067
Transportome remodeling of a symbiotic microalga inside a planktonic host
Caroline Juéry, et al., 2024. Transportome remodeling of a symbiotic microalga inside a planktonic host. The ISME Journal, Volume 18, Issue 1, wrae239. doi: 10.1093/ismejo/wrae239
A new sampling device for metabarcoding surveillance of port communities and detection of non-indigenous species
Jesús Zarcero, et al., 2024. A new sampling device for metabarcoding surveillance of port communities and detection of non-indigenous species. Iscience, 27, 1. doi: 10.1016/j.isci.2023.108588
The Spatial Distribution of Copepod Functional Traits in a Highly Anthropized Mediterranean Coastal Marine Region
Daniele Bellardini, et al., 2024. The Spatial Distribution of Copepod Functional Traits in a Highly Anthropized Mediterranean Coastal Marine Region. Environments, 11(6), 113. doi: 10.3390/environments11060113
Earth Science Data Repositories: Implementing the CARE Principles
Margaret O’Brien, et al., 2024. Earth Science Data Repositories: Implementing the CARE Principles. Data Science Journal, Volume 23, Page/Article: 37. doi: 10.5334/dsj-2024-037
Innovative and practical tools for monitoring and assessing biodiversity status and impacts of multiple human pressures in marine systems
Angel Borja, et al., 2024. Innovative and practical tools for monitoring and assessing biodiversity status and impacts of multiple human pressures in marine systems. Environmental Monitoring and Assessment, 196, no. 8, 694. doi: 10.1007/s10661-024-12861-2
Spatiotemporal changes of pelagic food webs investigated by environmental DNA metabarcoding and connectivity analysis
Daniele Bellardini, et al., 2024. Spatiotemporal changes of pelagic food webs investigated by environmental DNA metabarcoding and connectivity analysis. Philosophical Transactions B, 379, no. 1909, 20230178. doi: 10.1098/rstb.2023.0178
Mapping Topic Evolution across the 40-Year-Old Long-Term Ecological Research MareChiara Site in the Gulf of Naples, Italy
Luca Russo, et al., 2024. Mapping Topic Evolution across the 40-Year-Old Long-Term Ecological Research MareChiara Site in the Gulf of Naples, Italy. Oceans, 5(3), 591-610. doi: 10.3390/oceans5030034
Effects of Mesozooplankton Growth and Reproduction on Plankton and Organic Carbon Dynamics in a Marine Biogeochemical Model
Corentin Clerc, et al., 2024. Effects of Mesozooplankton Growth and Reproduction on Plankton and Organic Carbon Dynamics in a Marine Biogeochemical Model. Global Biogeochemical Cycles, Volume 38, Issue 9. doi: 10.1029/2024GB008153
The NEREA Augmented Observatory: an integrative approach to marine coastal ecology
Lucia Campese, et al., 2024. The NEREA Augmented Observatory: an integrative approach to marine coastal ecology. Scientific Data, 11, 989. doi: 10.1038/s41597-024-03787-y
Genetic Sex and Origin Identification Suggests Differential Migration of Male and Female Atlantic Bluefin Tuna (Thunnus thynnus) in the Northeast Atlantic
Einar Eg Nielsen, et al., 2024. Genetic Sex and Origin Identification Suggests Differential Migration of Male and Female Atlantic Bluefin Tuna (Thunnus thynnus) in the Northeast Atlantic. Evolutionary Applications, 17: e70009. doi: 10.1111/eva.70009
Spatio-temporal larval abundance dynamics of a depleted Baltic Sea herring ecotype
Henn Ojaveer, et al., 2024. Spatio-temporal larval abundance dynamics of a depleted Baltic Sea herring ecotype. ICES Journal of Marine Science, Volume 81, Issue 8. doi: 10.1093/icesjms/fsae102
Zoom into a twilight zone: a biodiversity survey of the Dohrn Canyon (Mediterranean sea) through environmental DNA metabarcoding
Luca Russo, et al., 2024. Zoom into a twilight zone: a biodiversity survey of the Dohrn Canyon (Mediterranean sea) through environmental DNA metabarcoding. Community Ecology, Volume 25, pages 403–411. doi: 10.1007/s42974-024-00207-4
Realised Thermal Niches in Marine Ectotherms Are Shaped by Ontogeny and Trophic Interactions
Alaia Morell, et al., 2024. Realised Thermal Niches in Marine Ectotherms Are Shaped by Ontogeny and Trophic Interactions. Ecology Letters, Volume 27, Issue 11. doi: 10.1111/ele.70017
2023
How many independent quantities can be extracted from ocean color?
Cael, Bisson, Boss, et al., 2023. How many independent quantities can be extracted from ocean color? Limnology and Oceanography Letters, 8: 603-610. doi: 10.1002/lol2.10319
Global climate-change trends detected in indicators of ocean ecology
Cael, Bisson, Boss, et al., 2023. Global climate-change trends detected in indicators of ocean ecology. Nature, 619, p551–554. doi: 10.1038/s41586-023-06321-z
The findings are an output of the Horizon 2020 COMFORT project, and BB Cael was partially funded through BIOcean5D during the project.
Global gradients in species richness of marine plankton functional groups
Benedetti, Fabio, et al., 2023. Global gradients in species richness of marine plankton functional groups. Journal of Plankton Research, 45, no. 6, p832-852. doi: 10.1093/plankt/fbad044
