Image credit: Karim Iliya / Kogia

Early career researchers

Meet the PhD students, postdocs and fellows involved in BIOcean5D. 

Hover over their pictures to learn more about their work. 

WP1: Filling the marine biodiversity knowledge gap

Mukeshkumar Bhendarkar
PhD student
AZTI, Spain
Funding: Netaji Subhas-ICAR International Fellowship (NS-ICARIF)

Fisheries ecology

PI: Naiara Rodríguez-Ezpeleta
Primarily focusing on Community Temperature Index (CTI) within fish communities along temporal gradients in the Bay of Biscay.
Cristina Claver
PhD student
AZTI, Spain
Funding: Education Department of the Basque Government

Ecology and genetics

PI: Naiara Rodríguez-Ezpeleta
I provide distribution and abundance maps of protected and highly commercial species using environmental DNA.
Marine Ethève
PhD student
University of Perpignan, France
Funding: Ministerial scholarship, BIOcean5D

Fisheries ecology

PI: Lucia Di Iorio
I study the spatio-temporal dynamics of marine forest soundscapes (kelp forests, zostera and posidonia seagrasses) in the context of global change. My research involves determining the sound library of this marine ecosystem and investigating the influence of abiotic parameters on its biophony.
Valentin Foulon
Research engineer
ENIB & IFREMER, France
Funding: ISBLUE flagship project BlueRevolution

Biologist | microscopist

PI: Raffaele Siano | Daniela Zeppilli
I study meiofauna communities with identification by imaging protocols.
Carlota R. Gazulla
Postdoctoral researcher
Sorbonne Université, France
Funding: BIOcean5D

Microbial Ecology

PI: Pierre Galand | François-Yves Bouget
I study the spatial and temporal dynamics of the microbial communities in the Mediterranean Sea. For that, I collect and use data from the Banyuls sur Mer Observatory stations (SOLA and MOLA) to generate long-term series of genomic data.
Thomas Haize
Expedition field technician
EMBL, Germany
Funding: Biocean5D, EMBL

Anthropogenic impact in marine environment

PI: Paola Bertucci
As part as the TREC expedition and leading the sediment sampling. I’m involved in the organisation, sampling, development of protocols and analysis of samples.
Erwan Legeay
Research engineer
Sorbonne Université - Station Biologique de Roscoff, France
Funding: BIOcean5D

Marine microbial ecologist

PI: Colomban de Vargas
I’m in charge of developing and deploying the Lamprey, a DNA sampling tool, at the European scale WP 1.5.1. I also participate in the water sampling in Roscoff and analysis for WP 1.4.3.
James O'Brien
Postdoctoral researcher
ETH Zürich, Switzerland
Funding: BIOcean5D, ETH-Weizmann bridging grant

Microbial Ecologist | Marine Biologist

PI: Shinichi Sunagawa
I aim to improve our understanding of aerosol microbiomes. Through the TREC expedition, we are collecting samples that will characterise the diversity, function and dispersal of airborne microbes across Europe.
Christina Pavloudi
Data scientist | Postdoctoral researcher
EMBRC
Funding: BIOcean5D, DTO-BioFlow, eDNAqua-Plan

Microbial Ecologist | Marine Biologist

PI: Nicolas Pade
Compiling DNA (and non-DNA) time series datasets from long term observatories, Analyzing metabarcoding sequence data, Filling metadata gaps, Identifying patterns of biodiversity change through time and in relation to environmental information.
Guillermo Rangel-Piñeros
Researcher
University of Copenhagen, Denmark
Funding: BIOcean5D

Microbiologist | Bioinformatician

PI: Antonio Fernandez Guerra
Conducting metagenomic analyses of sedaDNA extracted from cores collected at different coastal sites around Europe.
Joanna Warwick-Dugdale
Postdoctoral research assistant
Marine Biological Association, UK
Funding: BIOcean5D, MARCO-BOLO

Marine microbial ecologist

PI: Michael Cunliffe
I am investigating temporal and spatial patterns in marine biodiversity via metabarcoding time-series intercomparisons.

WP2: Understanding biodiversity in critical marine habitats and their keystone species

Hanin Alzubaidy
Postdoctoral researcher
University of Vienna, Austria
Funding: ERC Starting Grant EvoLucin

Microbiologist | Marine biologist

PI: Jillian Petersen
Studying the microbial diversity in the seagrass ecosystem with and without the presence of Lucinid clams.
Eric Armstrong
Postdoctoral researcher
Université de Perpignan, France
Funding: BIOcean5D

Ecophysiologist

PI: Serge Planes
I study how turbidity and heat stress influence the composition and evolution of the coral microbiome in order to better understand how coral holobionts cope with anthropogenic stressors.
Alvin Han
Postdoctoral researcher
EMBL Heidelberg, Germany
Funding: Biocean5D

Microbiology, Microbiome

PI: Detlev Arendt
I will be surveying the microbial diversity associated with Platynereis dumerilii across field sites for TREC, accompanied by an exploration of cultured worms from lab colonies.
Caroline Juery
Postdoctoral researcher
CNRS, France
Funding: Biocean5D, ERC SymbiOCEAN

Bioinformatics

PI: Johan Decelle
I characterise Phaeocystis holobiont studying the genetic and functional diversity of Phaeocystis species, their microbiome in free living (colonies) and in symbiosis with Acantharia. I am collecting single holobiont DNA barcoding samples and transcriptomics through TREC.
Chloé Mason
PhD student
IFREMER, France
Funding: BIOcean5D

Marine ecologist

PI: Raffaele Siano
I’m studying how river inputs influence the interactome of the coastal microbiome. I’m using eDNA, metabarcoding and network inference methods.
Pauline Narvaez
Postdoctoral researcher
CNRS, France
Funding: BIOcean5D

Marine ecologist

PI: José Montoya
I investigate the effects of temperature on the microbiota associated with marine sponges from the Western Mediterranean. Microbiome samples are collected at different locations from the southern France to northern Spain and analysed with metabarcoding, metatranscriptomic and metagenomic techniques.

WP3: Building a digital foundation for the holistic assessment of marine biodiversity

Victoria Bancel
Engineer
Sorbonne Université - IMEV - LOV, France
Funding: BIOcean5D

Data Management

PI: Jean-Olivier Irisson
Collect and collate novel data from non-invasive imaging methods (Ecotaxa to OBIS).
Nine Le Reun
Postdoctoral researcher
NORCE Research, Norway
Funding: BIOcean5D

Marine Microbial Ecologist

PI: Tristan Cordier
I am investigating patterns of benthic and plankton biodiversity between two deep-sea trenches in the North Pacific Ocean to identify the plankton communities that contribute most to carbon sequestration in the deep-ocean.
Stefanie Mayer
PhD student
ETH Zürich, Switzerland
Funding: BIOcean5D, ETH Zurich

Quantitative marine ecologist

PI: Meike Vogt | Loic Pellissier | Nicolas Gruber | Shinichi Sunagawa
Investigating global marine biodiversity patterns across indices, methods, functional groups, space and time; with a focus on coastal to open ocean gradients and an aim to bridge gaps in existing global models for plankton and fish.
Marcel Montanyès
Postdoctoral researcher
Technical University of Denmark, Denmark
WP3 | WP5
Funding: BIOcean5D, B-Useful, GenClim

Ecologist

PI: Brian MacKenzie | Martin Lindegren
Develop a suite of models for better understanding ecological drivers of marine species distribution, mapping them and producing forecast into future scenarios to inform management and conservation actions
Taylor Priest
Postdoctoral researcher
ETH Zürich, Switzerland
Funding: NOMIS-ETH Fellowship

Microbial ecologist

PI: Shinichi Sunagawa
Assessing microbial diversity and overall biodiversity through metabarcoding and metagenomics data.
Damiano Righetti
Postdoctoral researcher
Danish Technical University, Denmark
WP3 | WP5
Funding: BIOcean5D

Alpine botanist | marine macro-ecologist

PI: Brian MacKenzie | Martin Lindegren
I develop efficient routes for providing new, unbiased validation tests of species distribution model capabilities that fundamentally enable reliable diversity prediction. The 30% area target by 2030 brings urgency to this task. I use plankton and fish as testbeds.
Lucas Ustick
Postdoctoral researcher
EMBL Heidelberg, Germany
Funding: BIOcean5D, TREC

Bioinformatician | Microbial Ecologist

PI: Peer Bork
Planetary scale analysis of metagenomes with a focus on linking omics to microbial nutrient cycling.
Giorgio Vittorio Visco
PhD student
University of Padua, Italy
WP3 | WP4
Funding: BIOcean5D

Quantitative marine ecologist

PI: Daniele Iudicone | Meike Vogt
Development and study of stochastic models for population distributions in marine ecosystems.

WP4: Developing new theories for marine biodiversity, ecosystem function and their relationships

Alexandre Génin
Postdoctoral researcher
Theoretical and Experimental Ecology Station, CNRS, France
Funding: Biocean5D

Ecologist

PI: José Montoya
I use statistical, theoretical and modelling approaches to link theory and data in ecology, to understand the link between biodiversity and ecological functioning at different organisational and spatial scales.
Julie Lemoine
PhD student
Sorbonne Université - IMEV - LOV, France
Funding: BIOcean5D

Oceanography and marine ecology

PI: Fabien Lombard
I study traits of zooplankton and in particular the biomass/biovolume ratio (gelatinous/non-gelatinous) in order to better represent zooplankton diversity in BGC models.
Geoffrey Neumann
Postdoctoral researcher
University of Southampton, UK
Funding: BIOcean5D, UKRI, ERC

Plankton Biomodeller

PI: Ben Ward
Developing Lineage Based Model to explore how neutral processes (population drift, mutation) and dispersal may drive plankton biogeography on a global and local scale. More generally exploring the differing roles of these processes and environmental selection in driving the patterns we see.
Kobe Simoens
PhD student
Università degli Studi di Padova, Italy
Funding: Biocean5D

Physics

PI: Ben Ward | Laura Airoldi | Samir Simon Suweis | Sandro Azaele | Daniele Iudicone
Seascape as a complex system: the role of ocean transport on eco-evolutionary dynamics.

WP5: Monitoring the impact of human activity on marine biodiversity and modelling future ocean health

Matteo Bolzonella
Postdoctoral researcher
University of Padua, Italy
Funding: BIOcean5D

Ecology | Ecosystem modelling

PI: A. Barausse
Marine biodiversity modelling across spatial, temporal and human scales. Develop a global trophic model in order to understand interdependencies between different marine components and perform multi-criteria analysis for future forecast.
Thøger Engelund Knudsen
PhD student
DTU Aqua, Denmark
Funding: BIOcean5D

Mathematical ecologist

PI: Brian MacKenzie
I develop various models on long migration in pelagic species, which translates behavioural processes, based on environmental input, into spatiotemporal distribution of the species.
Shubham Krishna
Scientist
National Oceanography Centre, UK
Funding: BIOcean5D, Schmidt Sciences project CALIPSO

Ecosystem modelling | Marine Biogeochemistry

PI: Stephanie Henson
I model microbial diversity at different oceanic sites and study how they will be impacted by anthropogenic stressors, such as warming and eutrophication.
Ginevra Lilli
Postdoctoral researcher
CSIC-CEAB, Spain | CNRS-ISEM, France
Funding: BIOcean5D

Molecular ecologist | eDNA

PI: Xavier Turon | Frédérique Viard
I investigate environmental DNA (eDNA) metabarcoding data to assess port-related impacts on marine communities and on non-indigenous species (NIS) assemblages.
Leire Lopetegui Eguren
PhD student
AZTI, Spain
Funding: Education Department of the Basque Government

Fisheries ecology

PI: Eider Andonegi | Maria José Juan Jordá
I am developing SDMs exploring different methods and datasets for vulnerable species interacting with tropical tuna purse seine fisheries for assessing fishing impacts and informing the design of spatially-based conservation and management measures.
Josu Meléndez Arteaga
PhD student
AZTI, Spain
Funding: Department of Economic Development, Sustainability and Environment of the Basque Government

Marine ecologist

PI: Eider Andonegi | Xavier Corrales | Maria José Juan Jordá
I am developing a trophic analysis and ecosystem models of the tropical Atlantic Ocean in order to assess past, current and future responses of large predatory fishes (tropical tunas, billfishes and sharks) to commercial fishing and climate change.
Ngoc-Loi Nguyen
PhD student
Institute of Oceanology PAN, Poland
Funding: BIOcean5D, Polish NCN #2023/49/N/ST10/01626

Microbiologist

PI: Jan Pawlowski | Tristan Cordier
I perform metabarcoding analysis and develop DNA-based indicators of ecological status in Norwegian coastal areas impacted by industrial and urban activities.
Thelma Panaïotis
Research scientist
National Oceanography Centre, UK
Funding: BIOcean5D, CALIPSO (Schmidt Futures)

Computational ecologist

PI: BB Cael
I investigate how ML can help us improve the representation of zooplankton diversity in earth system models.
Ahmed Souissi
Postdoctoral researcher
IFREMER, France
Funding: BIOcean5D

Population genetics | Genomics

PI: Bruno Ernande
Investigating the role of functional and life history traits in shaping genetic diversity among marine fish species, focusing on the analysis and interpretation of data to understand ecological determinants of genetic variation.
Clément Violet
Postdoctoral researcher
IFREMER, France
Funding: BIOcean5D, OFB national project

Marine Ecology | Quantitative Ecology

PI: Raffaele Siano
I aim to enhance the prediction of non-indigenous species (NIIS) invasion success in European seas by exploring the role of species traits and environmental factors. I will use trait-based modelling and species distribution models to develop a predictive framework that considers abiotic and biotic factors and the impact of climate change on invasion success.

WP6: Assessing the value of biodiversity and marine natural capital to improve protective strategies

Julián Esteban-Cantillo
PhD student
Institut Jean Nicod, France
Funding: BIOcean5D

Biodiversity conservation

PI: Sacha Bourgeois-Gironde | Roberto Casati
I study dynamic alternatives to current spatial conservation schemes in marine ecosystems from the perspective of climate change, biodiversity and essential particle spreading.
Umer Gurchani
Postdoctoral researcher
Institut Jean Nicod, France
Funding: Biocean5D

Ecological Economics

PI: Sacha Bourgeois-Gironde
I am trying to update Weitzman’s index on biodiversity to include functional diversity.
Eva Wanek
Postdoctoral researcher
Institut Jean Nicod, France
Funding: BIOcean5D

Economics

PI: Sacha Bourgeois-Gironde
I work on values related to marine ecosystem services.

Early Career Researchers previously involved in BIOcean5D

Adrià Antich
Postdoctoral researcher
NORCE Research, Norway
Funding: ANERIS, BIOcean5D

Biologist

PI: Tristan Cordier
To develop the use of Machine learning approaches to predict the quality status of marine communities near the fish farms in Norway and to identify potential new indicators.
Pierre Kostyrka
Engineer
Sorbonne Université, France
Funding: BIOcean5D

Oceanography and marine ecology

PI: Fabien Lombard
My job is to deploy the PlanktoScope, a quantitative imaging tool, at the european scale. I also participate to the intercalibration, the data analysis, and the setup of projects involving the PlanktoScope.

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Learn more about BIOcean5D.